Analysis

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Fusion Gene Study-Analysis



To do list

./shuffleSequences_fastq.pl SRR064286_1.fastq SRR064286_2.fastq SRR064286_V.fastq
./velveth assembly_K21 21 -fastq -shortPaired SRR064286_V.fastq
./velvetg assembly_K21 -read_trkg yes
./oases assembly_K21
./velveth assembly_K25 25 -fastq -shortPaired SRR064286_V.fastq
./velvetg assembly_K25 -read_trkg yes
./oases assembly_K25
./velveth assembly_K29 29 -fastq -shortPaired SRR064286_V.fastq
./velvetg assembly_K29 -read_trkg yes
./oases assembly_K29
./velveth assembly_K33 33 -fastq -shortPaired SRR064286_V.fastq
./velvetg assembly_K33 -read_trkg yes
./oases assembly_K33
./velveth assembly_K33 33 -fastq -shortPaired SRR064286_V.fastq
./velvetg assembly_K33 -read_trkg yes
./oases assembly_K33
./velveth assembly_merged 27 -long assembly*/transcripts.fa
./velvetg assembly_merged -read_trkg yes -conserveLong yes
./oases assembly_merged -merge yes